EnhancerDB
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  3. rs566390955[chr1:226889820]
Enhancers that have rs566390955[chr1:226889820]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs566390955[chr1:226889820]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226889707 226890164 TCF7L2 GTRD no Colon (HCT116) 21387231
chr1 226889707 226890164 TCF7L2 GTRD no Colon (HCT116) 107876268
chr1 226889803 226889821 ESR2 JASPAR yes 35835235
Genes associated with rs566390955[chr1:226889820], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More