EnhancerDB
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  3. rs566515424[chr16:85648430]
Enhancers that have rs566515424[chr16:85648430]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85640485 85664563 enh16874
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Liver Stomach Muscle (A673) Placenta Embryonic Stem Cell Line (H1-hESC) Pancreas Muscle (Myotube) Uterus Blood (T-cell) Heart
Transcript factors that have rs566515424[chr16:85648430]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85643905 85651250 POLR2A UCSC Txn Factor no Conserved 108216765
chr16 85643905 85651250 POLR2A UCSC Txn Factor no Conserved 108216766
chr16 85646117 85649148 TCF7L2 GTRD no Colon (HCT116) 108216767
chr16 85646186 85655686 TCF7L2 GTRD no Colon (HCT116) 108216768
chr16 85646186 85655686 TCF7L2 GTRD no Colon (HCT116) 108216769
chr16 85646208 85651068 TCF7L2 GTRD no Colon (HCT116) 108216770
chr16 85646208 85651068 TCF7L2 GTRD no Colon (HCT116) 108216771
chr16 85646299 85655064 TCF7L2 GTRD no Colon (HCT116) 108216772
chr16 85646299 85655064 TCF7L2 GTRD no Colon (HCT116) 108216773
chr16 85647455 85651063 ZNF143 GTRD no Epithelial (MCF-7) 21730782
chr16 85647455 85651063 ZNF143 GTRD no Epithelial (MCF-7) 108216774
chr16 85647455 85651063 ZNF143 GTRD no Epithelial (MCF-7) 108216775
chr16 85647842 85649434 ZNF143 GTRD no Epithelial (MCF-7) 21730783
chr16 85647842 85649434 ZNF143 GTRD no Epithelial (MCF-7) 108216776
chr16 85648050 85650153 ZNF274 GTRD no Bone Marrow (K562) 21730784
chr16 85648050 85650153 ZNF274 GTRD no Bone Marrow (K562) 108216777
chr16 85648144 85649198 TCF7L2 GTRD no Colon (HCT116) 108216778
chr16 85648181 85648961 TCF7L2 GTRD no Colon (HCT116) 108216779
chr16 85648252 85648800 TCF7L2 GTRD no Colon (HCT116) 108216780
chr16 85648420 85648441 IRF1 JASPAR yes 12084083
chr16 85648423 85648431 FOXO3 JASPAR yes 12084084
chr16 85648424 85648439 STAT2 JASPAR yes 12084085
Genes associated with rs566515424[chr16:85648430], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More