EnhancerDB
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  3. rs566796786[chr1:229354438]
Enhancers that have rs566796786[chr1:229354438]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs566796786[chr1:229354438]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229354427 229354448 IRF1 JASPAR yes 35975738
chr1 229354428 229354443 FOXP1 JASPAR yes 35975739
chr1 229354429 229354438 SRY JASPAR yes 35975740
chr1 229354429 229354440 FOXP2 JASPAR yes 35975741
chr1 229354429 229354441 FOXC2 JASPAR yes 35975742
chr1 229354429 229354444 STAT2 JASPAR yes 35975743
chr1 229354430 229354441 FOXC1 JASPAR yes 35975744
chr1 229354430 229354444 STAT1 JASPAR yes 35975745
chr1 229354431 229354442 FOXA1 JASPAR yes 35975746
chr1 229354433 229354448 FOXP1 JASPAR yes 35975747
Genes associated with rs566796786[chr1:229354438], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More