EnhancerDB
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  3. rs568404562[chr17:48969473]
Enhancers that have rs568404562[chr17:48969473]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 48954425 48973436 enh32228
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs568404562[chr17:48969473]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 48968810 48969701 TCF7L2 GTRD no Colon (HCT116) 21770304
chr17 48969365 48969961 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21770305
chr17 48969462 48969476 GLIS2 JASPAR yes 54729922
chr17 48969470 48969485 IRF9 JASPAR yes 54729923
Genes associated with rs568404562[chr17:48969473], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More