EnhancerDB
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  3. rs568890517[chr1:27783244]
Enhancers that have rs568890517[chr1:27783244]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs568890517[chr1:27783244]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27783232 27783253 IRF1 JASPAR yes 27696864
chr1 27783236 27783257 IRF1 JASPAR yes 27696865
chr1 27783238 27783259 IRF1 JASPAR yes 27696866
chr1 27783239 27783254 FOXP1 JASPAR yes 27696867
chr1 27783239 27783260 IRF1 JASPAR yes 27696868
chr1 27783240 27783255 STAT2 JASPAR yes 27696869
chr1 27783240 27783261 IRF1 JASPAR yes 27696870
chr1 27783241 27783256 FOXP1 JASPAR yes 27696871
chr1 27783241 27783262 IRF1 JASPAR yes 27696872
chr1 27783242 27783263 IRF1 JASPAR yes 27696873
chr1 27783243 27783258 FOXP1 JASPAR yes 27696874
chr1 27783244 27783259 FOXP1 JASPAR yes 27696875
Genes associated with rs568890517[chr1:27783244], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More