EnhancerDB
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  3. rs569396879[chr1:19752159]
Enhancers that have rs569396879[chr1:19752159]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs569396879[chr1:19752159]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19752148 19752159 CDX2 JASPAR yes 27188512
chr1 19752149 19752160 HOXA10 JASPAR yes 27188513
chr1 19752150 19752159 CDX1 JASPAR yes 27188514
chr1 19752150 19752160 HOXA13 JASPAR yes 27188515
chr1 19752150 19752160 HOXB13 JASPAR yes 27188516
chr1 19752150 19752160 HOXD13 JASPAR yes 27188517
chr1 19752150 19752162 MEF2D JASPAR yes 27188518
chr1 19752151 19752163 FOXI1 JASPAR yes 27188519
Genes associated with rs569396879[chr1:19752159], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More