EnhancerDB
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  3. rs56979967[chr1:205262956]
Enhancers that have rs56979967[chr1:205262956]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205259785 205270135 enh12589
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr1 205262860 205263030 vista4730
VISTA
Transcript factors that have rs56979967[chr1:205262956]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205260611 205264392 ZNF274 GTRD no Bone Marrow (K562) 107861587
chr1 205260611 205264392 ZNF274 GTRD no Bone Marrow (K562) 107861588
chr1 205261539 205264526 ZNF274 GTRD no Bone Marrow (K562) 107861589
chr1 205261539 205264526 ZNF274 GTRD no Bone Marrow (K562) 107861590
chr1 205262050 205262966 ZNF143 GTRD no Epithelial (MCF-7) 107861591
chr1 205262195 205263336 ZNF274 GTRD no Blood (GM12878) 107861592
chr1 205262377 205264318 ZNF274 GTRD no Bone Marrow (K562) 107861594
chr1 205262377 205264318 ZNF274 GTRD no Bone Marrow (K562) 107861595
chr1 205262597 205264241 ZNF274 GTRD no Bone Marrow (K562) 107861596
chr1 205262597 205264241 ZNF274 GTRD no Bone Marrow (K562) 107861597
chr1 205262939 205262957 NFYA JASPAR yes 34752466
chr1 205262939 205262957 NFYA JASPAR yes 118440267
chr1 205262954 205262961 MEIS1 JASPAR yes 34752468
chr1 205262954 205262961 MEIS1 JASPAR yes 118440269
chr1 205262954 205262962 MEIS2 JASPAR yes 34752469
chr1 205262954 205262962 MEIS3 JASPAR yes 34752470
chr1 205262954 205262962 MEIS2 JASPAR yes 118440270
chr1 205262954 205262962 MEIS3 JASPAR yes 118440271
Genes associated with rs56979967[chr1:205262956], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More