EnhancerDB
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  3. rs571279203[chr15:42227556]
Enhancers that have rs571279203[chr15:42227556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 42202285 42235244 enh3549
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs571279203[chr15:42227556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 42227177 42227613 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21651350
chr15 42227177 42227613 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108135310
chr15 42227545 42227557 PKNOX2 JASPAR yes 23007289
chr15 42227546 42227556 ID4 JASPAR yes 23007290
chr15 42227546 42227556 TCF4 JASPAR yes 23007291
chr15 42227552 42227564 HES7 JASPAR yes 23007293
chr15 42227552 42227564 PKNOX1 JASPAR yes 23007294
chr15 42227552 42227564 PKNOX2 JASPAR yes 23007295
chr15 42227552 42227564 TGIF2 JASPAR yes 23007296
chr15 42227555 42227560 USF2 TRANSFAC yes 23007297
Genes associated with rs571279203[chr15:42227556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More