EnhancerDB
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  3. rs572411542[chr1:172329638]
Enhancers that have rs572411542[chr1:172329638]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172318125 172332422 enh12370
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs572411542[chr1:172329638]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172329626 172329647 IRF1 JASPAR yes 33126107
chr1 172329628 172329643 PRDM1 JASPAR yes 33126108
chr1 172329628 172329643 STAT2 JASPAR yes 33126109
chr1 172329630 172329642 IRF1 JASPAR yes 33126110
chr1 172329635 172329645 ETV3 JASPAR yes 33126111
chr1 172329635 172329649 SPI1 JASPAR yes 33126112
Genes associated with rs572411542[chr1:172329638], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More