EnhancerDB
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  3. rs572739325[chr1:39597487]
Enhancers that have rs572739325[chr1:39597487]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs572739325[chr1:39597487]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39597314 39599852 ZNF274 GTRD no Blood (GM12878) 107802889
chr1 39597314 39599852 ZNF274 GTRD no Blood (GM12878) 107802890
chr1 39597473 39597488 FOXA1 JASPAR yes 28255636
chr1 39597474 39597489 FOXP1 JASPAR yes 28255638
chr1 39597475 39597487 FOXC2 JASPAR yes 28255640
chr1 39597475 39597489 FOXF2 JASPAR yes 28255641
chr1 39597476 39597487 FOXB1 JASPAR yes 28255644
chr1 39597476 39597487 FOXC1 JASPAR yes 28255645
chr1 39597477 39597488 FOXA1 JASPAR yes 28255646
chr1 39597478 39597490 FOXI1 JASPAR yes 28255647
chr1 39597478 39597493 FOXP1 JASPAR yes 28255648
chr1 39597479 39597491 FOXC2 JASPAR yes 28255649
chr1 39597479 39597493 ONECUT3 JASPAR yes 28255650
chr1 39597482 39597494 FOXI1 JASPAR yes 28255652
chr1 39597483 39597495 FOXC2 JASPAR yes 28255653
chr1 39597485 39597489 YY1 TRANSFAC yes 28255654
chr1 39597485 39597500 FOXA1 JASPAR yes 28255655
chr1 39597486 39597498 FOXI1 JASPAR yes 28255656
chr1 39597486 39597501 FOXP1 JASPAR yes 28255657
chr1 39597487 39597498 FOXP2 JASPAR yes 28255658
chr1 39597487 39597499 FOXC2 JASPAR yes 28255659
chr1 39597487 39597501 FOXF2 JASPAR yes 28255660
Genes associated with rs572739325[chr1:39597487], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More