EnhancerDB
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  3. rs572854625[chr1:19272055]
Enhancers that have rs572854625[chr1:19272055]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19271920 19272097 vista595
VISTA
Transcript factors that have rs572854625[chr1:19272055]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19271677 19273824 TCF7L2 GTRD no Colon (HCT116) 107802286
chr1 19272042 19272063 REST JASPAR yes 27164641
chr1 19272042 19272063 REST JASPAR yes 118242633
chr1 19272043 19272062 REST JASPAR yes 27164642
chr1 19272043 19272062 REST JASPAR yes 118242634
Genes associated with rs572854625[chr1:19272055], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More