EnhancerDB
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  3. rs572936400[chr6:30780287]
Enhancers that have rs572936400[chr6:30780287]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30740965 30818275 enh23149
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs572936400[chr6:30780287]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30780281 30780302 IRF1 JASPAR yes 101053662
chr6 30780282 30780303 IRF1 JASPAR yes 101053663
chr6 30780283 30780304 IRF1 JASPAR yes 101053664
chr6 30780284 30780299 FOXP1 JASPAR yes 101053665
chr6 30780284 30780305 IRF1 JASPAR yes 101053666
chr6 30780286 30780301 FOXP1 JASPAR yes 101053667
chr6 30780287 30780302 FOXP1 JASPAR yes 101053668
Genes associated with rs572936400[chr6:30780287], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More