EnhancerDB
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  3. rs573563420[chr17:2790666]
Enhancers that have rs573563420[chr17:2790666]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs573563420[chr17:2790666]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2790662 2790669 NKX3-1 JASPAR yes 52782431
chr17 2790663 2790671 FOXC1 JASPAR yes 52782432
chr17 2790663 2790677 SPIC JASPAR yes 52782433
chr17 2790665 2790686 IRF1 JASPAR yes 52782434
Genes associated with rs573563420[chr17:2790666], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More