EnhancerDB
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  3. rs573888497[chr1:230289182]
Enhancers that have rs573888497[chr1:230289182]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs573888497[chr1:230289182]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230287538 230289779 ZNF274 GTRD no Bone Marrow (K562) 21391558
chr1 230287538 230289779 ZNF274 GTRD no Bone Marrow (K562) 107878789
chr1 230288643 230289893 TCF7L2 GTRD no Colon (HCT116) 21391559
chr1 230288643 230289893 TCF7L2 GTRD no Colon (HCT116) 107878790
chr1 230289177 230289198 IRF1 JASPAR yes 36027340
chr1 230289181 230289193 IRF1 JASPAR yes 36027341
chr1 230289182 230289200 IRF2 JASPAR yes 36027342
Genes associated with rs573888497[chr1:230289182], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More