EnhancerDB
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  3. rs574003955[chr2:102333484]
Enhancers that have rs574003955[chr2:102333484]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 102318065 102395755 enh5746
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs574003955[chr2:102333484]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 102333478 102333494 SOX4 JASPAR yes 22102107
chr2 102333478 102333494 SOX4 JASPAR yes 75830172
chr2 102333479 102333489 EMX1 JASPAR yes 75830173
chr2 102333479 102333489 GSX2 JASPAR yes 75830174
chr2 102333479 102333489 HOXB2 JASPAR yes 75830175
chr2 102333479 102333489 MEOX2 JASPAR yes 75830176
chr2 102333479 102333489 MNX1 JASPAR yes 75830177
chr2 102333479 102333494 SOX21 JASPAR yes 22102108
chr2 102333479 102333494 SOX21 JASPAR yes 75830178
chr2 102333480 102333488 LMX1A JASPAR yes 75830179
chr2 102333480 102333488 LMX1B JASPAR yes 75830180
chr2 102333480 102333488 NKX6-1 JASPAR yes 75830181
chr2 102333480 102333488 NKX6-2 JASPAR yes 75830182
chr2 102333480 102333488 PDX1 JASPAR yes 75830183
chr2 102333480 102333488 VAX1 JASPAR yes 75830184
chr2 102333480 102333488 VAX2 JASPAR yes 75830185
chr2 102333480 102333488 VSX1 JASPAR yes 75830186
Genes associated with rs574003955[chr2:102333484], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More