EnhancerDB
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  3. rs575082890[chr6:88441222]
Enhancers that have rs575082890[chr6:88441222]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 88422133 88444375 enh23401
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs575082890[chr6:88441222]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 88441203 88441224 IRF1 JASPAR yes 103326315
chr6 88441216 88441237 IRF1 JASPAR yes 103326318
chr6 88441217 88441238 IRF1 JASPAR yes 103326319
chr6 88441218 88441239 IRF1 JASPAR yes 103326320
chr6 88441219 88441240 IRF1 JASPAR yes 103326321
chr6 88441220 88441235 FOXP1 JASPAR yes 103326322
chr6 88441220 88441241 IRF1 JASPAR yes 103326323
chr6 88441221 88441236 FOXP1 JASPAR yes 103326324
chr6 88441221 88441242 IRF1 JASPAR yes 103326325
chr6 88441222 88441237 FOXP1 JASPAR yes 103326326
chr6 88441222 88441243 IRF1 JASPAR yes 103326327
Genes associated with rs575082890[chr6:88441222], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More