EnhancerDB
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  3. rs575157828[chr16:88835708]
Enhancers that have rs575157828[chr16:88835708]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs575157828[chr16:88835708]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88833625 88836287 TCF7L2 GTRD no Colon (HCT116) 21736939
chr16 88833625 88836287 TCF7L2 GTRD no Colon (HCT116) 108223393
chr16 88834612 88836412 ZNF143 GTRD no Epithelial (MCF-7) 21736940
chr16 88834612 88836412 ZNF143 GTRD no Epithelial (MCF-7) 108223394
chr16 88835481 88836253 TCF7L2 GTRD no Colon (HCT116) 21736941
chr16 88835481 88836253 TCF7L2 GTRD no Colon (HCT116) 108223395
chr16 88835506 88836232 TCF7L2 GTRD no Colon (HCT116) 21736942
chr16 88835506 88836232 TCF7L2 GTRD no Colon (HCT116) 108223396
chr16 88835524 88836264 TCF7L2 GTRD no Colon (HCT116) 21736943
chr16 88835524 88836264 TCF7L2 GTRD no Colon (HCT116) 108223397
chr16 88835538 88836091 TCF7L2 GTRD no Colon (HCT116) 21736944
chr16 88835538 88836091 TCF7L2 GTRD no Colon (HCT116) 108223398
chr16 88835640 88836216 TCF7L2 GTRD no Colon (HCT116) 21736945
chr16 88835640 88836216 TCF7L2 GTRD no Colon (HCT116) 108223399
chr16 88835651 88836369 ZNF143 GTRD no Epithelial (MCF-7) 21736946
chr16 88835651 88836369 ZNF143 GTRD no Epithelial (MCF-7) 108223400
chr16 88835691 88836259 TCF7L2 GTRD no Colon (HCT116) 21736947
chr16 88835691 88836259 TCF7L2 GTRD no Colon (HCT116) 108223401
chr16 88835703 88835717 PLAG1 JASPAR yes 12302229
Genes associated with rs575157828[chr16:88835708], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More