EnhancerDB
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  3. rs575852030[chr1:234883539]
Enhancers that have rs575852030[chr1:234883539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234877045 234913055 enh12796
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs575852030[chr1:234883539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234878419 234883607 ZNF274 GTRD no Blood (GM12878) 107881636
chr1 234878974 234883568 ZNF274 GTRD no Blood (GM12878) 107881637
chr1 234881144 234883574 ZNF274 GTRD no Blood (GM12878) 107881647
chr1 234883104 234883658 ZNF274 GTRD no Bone Marrow (K562) 21397515
chr1 234883168 234883705 ZNF274 GTRD no Liver (HepG2) 21397516
chr1 234883528 234883542 ONECUT2 JASPAR yes 36310685
chr1 234883528 234883542 ONECUT3 JASPAR yes 36310686
chr1 234883535 234883548 EOMES JASPAR yes 36310687
chr1 234883537 234883547 TBR1 JASPAR yes 36310688
Genes associated with rs575852030[chr1:234883539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More