EnhancerDB
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  3. rs577407728[chr5:172217065]
Enhancers that have rs577407728[chr5:172217065]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172200585 172237795 enh22816
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr5 172217004 172217294 vista50172
VISTA
Transcript factors that have rs577407728[chr5:172217065]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172217052 172217069 RARA JASPAR yes 67827244
chr5 172217052 172217069 RARA JASPAR yes 70763220
chr5 172217053 172217072 CTCF JASPAR yes 67827246
chr5 172217053 172217072 CTCF JASPAR yes 70763222
chr5 172217064 172217068 LFA1 TRANSFAC yes 67827247
chr5 172217064 172217068 LFA1 TRANSFAC yes 70763223
Genes associated with rs577407728[chr5:172217065], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More