EnhancerDB
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  3. rs5777930[chr1:154717401]
Enhancers that have rs5777930[chr1:154717401]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154711786 154726515 enh27142
Brain (SK-N-SH) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Peripheral Blood (MM.1S) Uterus Muscle (Myoblast) Spleen Neural Stem Cells (H9) Thymus Heart
chr1 154717398 154717575 vista3389
VISTA
Transcript factors that have rs5777930[chr1:154717401]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154717112 154718255 AR GTRD no Prostate (PC-3) 107833239
chr1 154717237 154717777 ZNF274 GTRD no Liver (HepG2) 107833240
chr1 154717310 154717771 ZNF143 GTRD no Epithelial (MCF-7) 21340710
chr1 154717310 154717771 ZNF143 GTRD no Epithelial (MCF-7) 107833241
chr1 154717396 154717417 IRF1 JASPAR yes 32306434
chr1 154717396 154717417 IRF1 JASPAR yes 118373519
chr1 154717399 154717414 FOXP1 JASPAR yes 32306435
chr1 154717399 154717414 FOXP1 JASPAR yes 118373520
chr1 154717400 154717415 FOXP1 JASPAR yes 32306436
chr1 154717400 154717415 FOXP1 JASPAR yes 118373521
chr1 154717401 154717416 FOXP1 JASPAR yes 32306437
chr1 154717401 154717416 FOXP1 JASPAR yes 118373522
chr1 154717401 154717422 IRF1 JASPAR yes 32306438
chr1 154717401 154717422 IRF1 JASPAR yes 118373523
Genes associated with rs5777930[chr1:154717401], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More