EnhancerDB
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  3. rs5778730[chr1:172319456]
Enhancers that have rs5778730[chr1:172319456]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172318125 172332422 enh12370
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs5778730[chr1:172319456]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172319448 172319456 GATA3 JASPAR yes 33124450
chr1 172319454 172319474 RREB1 JASPAR yes 33124451
chr1 172319456 172319476 RREB1 JASPAR yes 33124452
Genes associated with rs5778730[chr1:172319456], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More