EnhancerDB
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  3. rs578140018[chr1:39660013]
Enhancers that have rs578140018[chr1:39660013]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs578140018[chr1:39660013]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39659992 39660013 IRF1 JASPAR yes 28265625
chr1 39659997 39660018 IRF1 JASPAR yes 28265628
chr1 39659998 39660013 FOXP1 JASPAR yes 28265629
chr1 39659999 39660014 STAT2 JASPAR yes 28265630
chr1 39660002 39660023 IRF1 JASPAR yes 28265631
chr1 39660003 39660018 FOXP1 JASPAR yes 28265632
chr1 39660004 39660019 STAT2 JASPAR yes 28265633
chr1 39660007 39660028 IRF1 JASPAR yes 28265634
chr1 39660008 39660023 FOXP1 JASPAR yes 28265635
chr1 39660008 39660029 IRF1 JASPAR yes 28265636
chr1 39660009 39660024 STAT2 JASPAR yes 28265637
chr1 39660012 39660033 IRF1 JASPAR yes 28265638
chr1 39660013 39660028 FOXP1 JASPAR yes 28265639
chr1 39660013 39660034 IRF1 JASPAR yes 28265640
Genes associated with rs578140018[chr1:39660013], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More