EnhancerDB
  1. Home
  2. SNP
  3. rs590214[chr1:39612493]
Enhancers that have rs590214[chr1:39612493]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs590214[chr1:39612493]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39612479 39612495 SOX4 JASPAR yes 28258024
chr1 39612481 39612494 DUXA JASPAR yes 28258025
chr1 39612482 39612493 DUX4 JASPAR yes 28258026
chr1 39612482 39612493 PHOX2A JASPAR yes 28258027
chr1 39612482 39612493 PROP1 JASPAR yes 28258028
chr1 39612482 39612498 POU4F2 JASPAR yes 28258029
chr1 39612482 39612498 POU4F3 JASPAR yes 28258030
chr1 39612484 39612495 HOXA10 JASPAR yes 28258031
chr1 39612484 39612498 POU4F1 JASPAR yes 28258032
chr1 39612484 39612499 HNF1A JASPAR yes 28258033
chr1 39612485 39612495 GSX2 JASPAR yes 28258034
chr1 39612485 39612495 HOXB2 JASPAR yes 28258035
chr1 39612485 39612495 HOXB3 JASPAR yes 28258036
chr1 39612485 39612495 MNX1 JASPAR yes 28258037
chr1 39612485 39612495 POU6F1 JASPAR yes 28258038
chr1 39612485 39612498 HNF1B JASPAR yes 28258039
chr1 39612485 39612499 POU4F1 JASPAR yes 28258040
chr1 39612485 39612501 POU4F3 JASPAR yes 28258041
chr1 39612486 39612494 LMX1A JASPAR yes 28258042
chr1 39612486 39612494 LMX1B JASPAR yes 28258043
chr1 39612486 39612494 NKX6-1 JASPAR yes 28258044
chr1 39612486 39612494 NKX6-2 JASPAR yes 28258045
chr1 39612486 39612494 VAX1 JASPAR yes 28258046
chr1 39612486 39612494 VAX2 JASPAR yes 28258047
chr1 39612486 39612494 VSX1 JASPAR yes 28258048
chr1 39612486 39612494 VSX2 JASPAR yes 28258049
chr1 39612488 39612503 HNF1A JASPAR yes 28258050
chr1 39612489 39612502 HNF1B JASPAR yes 28258051
Genes associated with rs590214[chr1:39612493], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More