EnhancerDB
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  3. rs59513960[chr2:232478974]
Enhancers that have rs59513960[chr2:232478974]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232460065 232495135 enh6201
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr2 232478879 232479328 vista35161
VISTA
Transcript factors that have rs59513960[chr2:232478974]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435689
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435690
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435691
chr2 232478397 232479084 MYC UCSC Txn Factor no Conserved 108435692
chr2 232478397 232479084 MYC UCSC Txn Factor no Conserved 108435693
chr2 232478401 232479330 TCF7L2 UCSC Txn Factor no Conserved 108435694
chr2 232478401 232479330 TCF7L2 UCSC Txn Factor no Conserved 108435695
chr2 232478459 232479047 MAX UCSC Txn Factor no Conserved 108435696
chr2 232478459 232479047 MAX UCSC Txn Factor no Conserved 108435697
chr2 232478530 232479272 E2F1 UCSC Txn Factor no Conserved 108435699
chr2 232478530 232479272 E2F1 UCSC Txn Factor no Conserved 108435700
chr2 232478964 232478979 NR2C2 JASPAR yes 22229259
chr2 232478964 232478979 NR2C2 JASPAR yes 81726115
chr2 232478965 232478975 SP1 JASPAR yes 22229260
chr2 232478965 232478975 SP1 JASPAR yes 81726116
chr2 232478966 232478974 SP1 TRANSFAC yes 22229261
chr2 232478966 232478974 SP1 TRANSFAC yes 81726117
chr2 232478968 232478974 SP1 TRANSFAC yes 22229264
chr2 232478968 232478974 SP1 TRANSFAC yes 81726120
chr2 232478972 232478977 SP1 TRANSFAC yes 22229265
chr2 232478972 232478977 SP1 TRANSFAC yes 81726121
chr2 232478973 232478987 MTF1 JASPAR yes 22229266
chr2 232478973 232478987 MTF1 JASPAR yes 81726122
Genes associated with rs59513960[chr2:232478974], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More