EnhancerDB
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  3. rs60390189[chr5:172291271]
Enhancers that have rs60390189[chr5:172291271]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172258805 172341224 enh22817
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs60390189[chr5:172291271]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172291263 172291284 IRF1 JASPAR yes 67836402
chr5 172291265 172291286 IRF1 JASPAR yes 67836403
chr5 172291266 172291287 IRF1 JASPAR yes 67836404
chr5 172291267 172291288 IRF1 JASPAR yes 67836405
chr5 172291268 172291283 FOXP1 JASPAR yes 67836406
chr5 172291268 172291289 IRF1 JASPAR yes 67836407
chr5 172291269 172291290 IRF1 JASPAR yes 67836408
chr5 172291270 172291285 FOXP1 JASPAR yes 67836409
chr5 172291270 172291291 IRF1 JASPAR yes 67836410
chr5 172291271 172291286 FOXP1 JASPAR yes 67836411
chr5 172291271 172291292 IRF1 JASPAR yes 67836412
Genes associated with rs60390189[chr5:172291271], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More