EnhancerDB
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  3. rs6424171[chr1:24615160]
Enhancers that have rs6424171[chr1:24615160]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 24599645 24630859 enh11619
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs6424171[chr1:24615160]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 24615153 24615169 POU4F2 JASPAR yes 27496292
chr1 24615153 24615169 POU4F3 JASPAR yes 27496293
chr1 24615155 24615165 HOXA13 JASPAR yes 27496295
chr1 24615155 24615165 HOXD13 JASPAR yes 27496296
chr1 24615155 24615166 HOXA10 JASPAR yes 27496297
chr1 24615155 24615169 POU4F1 JASPAR yes 27496298
chr1 24615156 24615165 CDX1 JASPAR yes 27496299
chr1 24615156 24615167 CDX2 JASPAR yes 27496300
chr1 24615157 24615173 POU4F2 JASPAR yes 27496301
chr1 24615157 24615173 POU4F3 JASPAR yes 27496302
chr1 24615158 24615173 FOXA1 JASPAR yes 27496303
chr1 24615159 24615171 FOXI1 JASPAR yes 27496304
chr1 24615159 24615173 POU4F1 JASPAR yes 27496305
chr1 24615159 24615174 HNF1A JASPAR yes 27496306
chr1 24615160 24615172 FOXC2 JASPAR yes 27496307
chr1 24615160 24615173 HNF1B JASPAR yes 27496308
chr1 24615160 24615174 ONECUT2 JASPAR yes 27496309
chr1 24615160 24615174 ONECUT3 JASPAR yes 27496310
chr1 24615160 24615174 POU4F1 JASPAR yes 27496311
Genes associated with rs6424171[chr1:24615160], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More