EnhancerDB
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  3. rs6540935[chr1:10571841]
Enhancers that have rs6540935[chr1:10571841]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 10562245 10593475 enh59
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs6540935[chr1:10571841]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 10571827 10571841 NR2F1 JASPAR yes 26719309
chr1 10571827 10571841 RXRB JASPAR yes 26719310
chr1 10571827 10571841 RXRG JASPAR yes 26719311
chr1 10571827 10571842 HNF4G JASPAR yes 26719312
chr1 10571835 10571850 RUNX2 JASPAR yes 26719313
chr1 10571838 10571849 RUNX1 JASPAR yes 26719314
chr1 10571838 10571850 GLI2 JASPAR yes 26719315
chr1 10571838 10571850 ZBTB7C JASPAR yes 26719316
chr1 10571839 10571849 RUNX3 JASPAR yes 26719317
Genes associated with rs6540935[chr1:10571841], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More