EnhancerDB
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  3. rs6541298[chr1:230294648]
Enhancers that have rs6541298[chr1:230294648]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6541298[chr1:230294648]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230294641 230294659 RARA JASPAR yes 36028082
chr1 230294643 230294658 HNF4A JASPAR yes 36028084
chr1 230294644 230294658 NR2F1 JASPAR yes 36028085
chr1 230294644 230294658 RXRB JASPAR yes 36028086
chr1 230294644 230294658 RXRG JASPAR yes 36028087
chr1 230294644 230294659 HNF4G JASPAR yes 36028088
Genes associated with rs6541298[chr1:230294648], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 230193536 230417870 + GALNT2 ENSG00000143641.8 230193536 0 Esophagus 0.237128 1937