EnhancerDB
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  3. rs6556050[chr5:172271294]
Enhancers that have rs6556050[chr5:172271294]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172258805 172341224 enh22817
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6556050[chr5:172271294]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172271275 172271295 ESR1 JASPAR yes 67833688
chr5 172271282 172271296 ZIC1 JASPAR yes 67833689
chr5 172271282 172271297 ZIC3 JASPAR yes 67833690
chr5 172271282 172271297 ZIC4 JASPAR yes 67833691
chr5 172271290 172271301 E2F1 JASPAR yes 67833693
Genes associated with rs6556050[chr5:172271294], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More