EnhancerDB
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  3. rs6580855[chr12:52519648]
Enhancers that have rs6580855[chr12:52519648]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs6580855[chr12:52519648]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52518275 52519891 AR GTRD no Prostate (PC-3) 21546230
chr12 52519065 52523398 P63 GTRD no Skin (Keratinocyte) 21546231
chr12 52519308 52519653 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546239
chr12 52519499 52523414 P63 GTRD no Skin (Keratinocyte) 21546243
chr12 52519633 52519648 IRF9 JASPAR yes 120919490
chr12 52519635 52519656 IRF1 JASPAR yes 120919491
chr12 52519637 52519652 PRDM1 JASPAR yes 120919492
chr12 52519637 52519652 STAT2 JASPAR yes 120919493
chr12 52519638 52519652 STAT1 JASPAR yes 120919494
chr12 52519646 52519650 NFE TRANSFAC yes 120919495
chr12 52519646 52519651 GATA1 TRANSFAC yes 120919496
chr12 52519646 52519652 GATA3 JASPAR yes 120919497
Genes associated with rs6580855[chr12:52519648], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More