EnhancerDB
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  3. rs6662543[chr1:39859026]
Enhancers that have rs6662543[chr1:39859026]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39853990 39867590 enh11763
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs6662543[chr1:39859026]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39859020 39859030 TFE3 JASPAR yes 28272707
chr1 39859020 39859030 TFEB JASPAR yes 28272708
chr1 39859020 39859031 USF1 JASPAR yes 28272709
chr1 39859020 39859031 USF2 JASPAR yes 28272710
chr1 39859021 39859031 MAX JASPAR yes 28272711
Genes associated with rs6662543[chr1:39859026], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More