EnhancerDB
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  3. rs6682099[chr1:19749636]
Enhancers that have rs6682099[chr1:19749636]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6682099[chr1:19749636]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19749627 19749636 PITX3 JASPAR yes 27188140
chr1 19749627 19749637 GSC2 JASPAR yes 27188141
chr1 19749627 19749637 GSC JASPAR yes 27188142
chr1 19749628 19749636 OTX1 JASPAR yes 27188143
chr1 19749628 19749636 OTX2 JASPAR yes 27188144
chr1 19749628 19749636 RHOXF1 JASPAR yes 27188145
chr1 19749633 19749643 EN2 JASPAR yes 27188146
chr1 19749633 19749643 ESX1 JASPAR yes 27188147
chr1 19749633 19749643 GBX1 JASPAR yes 27188148
chr1 19749633 19749643 GSX1 JASPAR yes 27188149
chr1 19749633 19749643 GSX2 JASPAR yes 27188150
chr1 19749633 19749643 LBX2 JASPAR yes 27188151
chr1 19749633 19749643 LHX2 JASPAR yes 27188152
chr1 19749633 19749643 RAX JASPAR yes 27188153
chr1 19749634 19749638 H1TF2 TRANSFAC yes 27188154
chr1 19749634 19749638 NFE TRANSFAC yes 27188155
chr1 19749634 19749638 SRF TRANSFAC yes 27188156
chr1 19749634 19749642 BARX1 JASPAR yes 27188157
chr1 19749634 19749642 BSX JASPAR yes 27188158
chr1 19749634 19749642 DLX6 JASPAR yes 27188159
chr1 19749634 19749642 ISX JASPAR yes 27188160
chr1 19749634 19749642 LBX1 JASPAR yes 27188161
chr1 19749634 19749642 LHX9 JASPAR yes 27188162
chr1 19749634 19749642 MSX1 JASPAR yes 27188163
chr1 19749634 19749642 MSX2 JASPAR yes 27188164
chr1 19749634 19749642 NKX6-2 JASPAR yes 27188165
chr1 19749634 19749642 PRRX1 JASPAR yes 27188166
chr1 19749634 19749642 RAX2 JASPAR yes 27188167
chr1 19749634 19749642 SHOX JASPAR yes 27188168
chr1 19749634 19749642 UNCX JASPAR yes 27188169
Genes associated with rs6682099[chr1:19749636], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More