EnhancerDB
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  3. rs6684439[chr1:154395839]
Enhancers that have rs6684439[chr1:154395839]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154376585 154406743 enh12276
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6684439[chr1:154395839]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154395818 154395839 IRF1 JASPAR yes 32291013
chr1 154395837 154395851 RXRB JASPAR yes 32291018
chr1 154395837 154395851 RXRG JASPAR yes 32291019
chr1 154395837 154395852 NR2C2 JASPAR yes 32291020
Genes associated with rs6684439[chr1:154395839], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More