EnhancerDB
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  3. rs6685313[chr1:230312294]
Enhancers that have rs6685313[chr1:230312294]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6685313[chr1:230312294]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230312279 230312295 POU4F3 JASPAR yes 36030692
chr1 230312285 230312299 PAX6 JASPAR yes 36030693
chr1 230312293 230312303 ALX3 JASPAR yes 36030694
chr1 230312293 230312303 GSX1 JASPAR yes 36030695
chr1 230312293 230312303 GSX2 JASPAR yes 36030696
chr1 230312293 230312303 HOXB2 JASPAR yes 36030697
chr1 230312293 230312303 HOXB3 JASPAR yes 36030698
chr1 230312293 230312303 MEOX1 JASPAR yes 36030699
chr1 230312293 230312303 MEOX2 JASPAR yes 36030700
chr1 230312293 230312303 MIXL1 JASPAR yes 36030701
chr1 230312293 230312304 HOXA10 JASPAR yes 36030702
chr1 230312294 230312302 LMX1A JASPAR yes 36030703
chr1 230312294 230312302 LMX1B JASPAR yes 36030704
chr1 230312294 230312302 NKX6-1 JASPAR yes 36030705
chr1 230312294 230312302 NKX6-2 JASPAR yes 36030706
chr1 230312294 230312302 PDX1 JASPAR yes 36030707
chr1 230312294 230312302 VAX1 JASPAR yes 36030708
chr1 230312294 230312302 VAX2 JASPAR yes 36030709
chr1 230312294 230312302 VSX1 JASPAR yes 36030710
chr1 230312294 230312304 HOXD13 JASPAR yes 36030711
Genes associated with rs6685313[chr1:230312294], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 230972865 231005335 - C1orf198 ENSG00000119280.12 231005335 660571 Pancreas 0.300925 1942