EnhancerDB
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Enhancers that have rs6686680[chr1:230280522]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 230280348 230284066 vista144
VISTA
Transcript factors that have rs6686680[chr1:230280522]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230279624 230280767 ZNF143 GTRD no Epithelial (MCF-7) 21391538
chr1 230279624 230280767 ZNF143 GTRD no Epithelial (MCF-7) 107686553
chr1 230279624 230280767 ZNF143 GTRD no Epithelial (MCF-7) 107878768
chr1 230280515 230280525 SREBF1 JASPAR yes 36026215
chr1 230280515 230280525 SREBF2 JASPAR yes 36026216
chr1 230280515 230280525 SREBF1 JASPAR yes 71160840
chr1 230280515 230280525 SREBF2 JASPAR yes 71160841
chr1 230280522 230280532 GSC2 JASPAR yes 36026217
chr1 230280522 230280532 GSC JASPAR yes 36026218
chr1 230280522 230280532 GSC2 JASPAR yes 71160842
chr1 230280522 230280532 GSC JASPAR yes 71160843
Genes associated with rs6686680[chr1:230280522], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More