EnhancerDB
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  3. rs6700698[chr1:39662654]
Enhancers that have rs6700698[chr1:39662654]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr1 39662647 39663006 vista1266
VISTA
Transcript factors that have rs6700698[chr1:39662654]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39661905 39662659 ZNF143 GTRD no Epithelial (MCF-7) 107802898
chr1 39662639 39662658 PAX5 JASPAR yes 28266063
chr1 39662639 39662658 PAX5 JASPAR yes 118275589
chr1 39662649 39662654 SP1 TRANSFAC yes 28266064
chr1 39662649 39662654 SP1 TRANSFAC yes 118275590
Genes associated with rs6700698[chr1:39662654], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 40420802 40435638 + MFSD2A ENSG00000168389.13 40420802 758148 Lung 0.226589 556