EnhancerDB
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  3. rs6861538[chr5:172442373]
Enhancers that have rs6861538[chr5:172442373]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172432905 172446573 enh22818
Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr5 172442253 172442613 vista50200
VISTA
Transcript factors that have rs6861538[chr5:172442373]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172442370 172442382 HES5 JASPAR yes 67848372
chr5 172442370 172442382 PKNOX1 JASPAR yes 67848373
chr5 172442370 172442382 PKNOX2 JASPAR yes 67848374
chr5 172442370 172442382 TGIF1 JASPAR yes 67848375
chr5 172442370 172442382 TGIF2 JASPAR yes 67848376
chr5 172442370 172442382 HES5 JASPAR yes 70765060
chr5 172442370 172442382 PKNOX1 JASPAR yes 70765061
chr5 172442370 172442382 PKNOX2 JASPAR yes 70765062
chr5 172442370 172442382 TGIF1 JASPAR yes 70765063
chr5 172442370 172442382 TGIF2 JASPAR yes 70765064
chr5 172442371 172442381 CLOCK JASPAR yes 67848377
chr5 172442371 172442381 NEUROG2 JASPAR yes 67848378
chr5 172442371 172442381 CLOCK JASPAR yes 70765065
chr5 172442371 172442381 NEUROG2 JASPAR yes 70765066
chr5 172442372 172442382 MAX JASPAR yes 67848379
chr5 172442372 172442382 MAX JASPAR yes 70765067
Genes associated with rs6861538[chr5:172442373], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More