EnhancerDB
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Enhancers that have rs689228[chr1:39647696]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs689228[chr1:39647696]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39647688 39647697 HIC2 JASPAR yes 28263478
chr1 39647692 39647702 ID4 JASPAR yes 28263480
chr1 39647692 39647702 TCF3 JASPAR yes 28263481
chr1 39647692 39647702 TCF4 JASPAR yes 28263482
chr1 39647693 39647702 SNAI2 JASPAR yes 28263483
chr1 39647694 39647699 USF2 TRANSFAC yes 28263484
Genes associated with rs689228[chr1:39647696], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More