EnhancerDB
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Enhancers that have rs7245853[chr19:2625239]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2605719 2641695 enh4960
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs7245853[chr19:2625239]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2620106 2625995 ZNF274 GTRD no Blood (GM12878) 21837677
chr19 2620106 2625995 ZNF274 GTRD no Blood (GM12878) 108363248
chr19 2620106 2625995 ZNF274 GTRD no Blood (GM12878) 108363249
chr19 2620106 2625995 ZNF274 GTRD no Blood (GM12878) 108363250
chr19 2620106 2625995 ZNF274 GTRD no Blood (GM12878) 108363251
chr19 2622272 2625966 ZNF274 GTRD no Blood (GM12878) 21837827
chr19 2622272 2625966 ZNF274 GTRD no Blood (GM12878) 108363412
chr19 2622272 2625966 ZNF274 GTRD no Blood (GM12878) 108363413
chr19 2624209 2625468 ZNF274 GTRD no Cervix (HeLa-S3) 21837828
chr19 2624209 2625468 ZNF274 GTRD no Cervix (HeLa-S3) 108363414
chr19 2624345 2625409 TCF7L2 GTRD no Colon (HCT116) 21837830
chr19 2624345 2625409 TCF7L2 GTRD no Colon (HCT116) 108363416
chr19 2624355 2625248 ZNF274 GTRD no Blood (GM12878) 21837832
chr19 2624355 2625248 ZNF274 GTRD no Blood (GM12878) 108363418
chr19 2624356 2625912 ZNF274 GTRD no Blood (GM12878) 21837833
chr19 2624356 2625912 ZNF274 GTRD no Blood (GM12878) 108363419
chr19 2624356 2625912 ZNF274 GTRD no Blood (GM12878) 108363420
chr19 2624357 2625538 ZNF274 GTRD no Blood (GM12878) 21837835
chr19 2624357 2625538 ZNF274 GTRD no Blood (GM12878) 108363422
chr19 2624362 2625250 ZNF143 GTRD no Epithelial (MCF-7) 108363423
chr19 2624369 2625335 ZNF143 GTRD no Epithelial (MCF-7) 108363425
chr19 2624374 2625381 ZNF143 GTRD no Epithelial (MCF-7) 108363426
chr19 2624402 2625951 ZNF274 GTRD no Blood (GM12878) 21837837
chr19 2624402 2625951 ZNF274 GTRD no Blood (GM12878) 108363429
chr19 2624402 2625951 ZNF274 GTRD no Blood (GM12878) 108363430
chr19 2624407 2625242 TCF7L2 GTRD no Colon (HCT116) 21837838
chr19 2624407 2625242 TCF7L2 GTRD no Colon (HCT116) 108363432
chr19 2624423 2625400 ZNF274 GTRD no Blood (GM12878) 21837840
chr19 2624423 2625400 ZNF274 GTRD no Blood (GM12878) 108363436
chr19 2624424 2625322 ZNF274 GTRD no Blood (GM12878) 21837841
chr19 2624424 2625322 ZNF274 GTRD no Blood (GM12878) 108363438
chr19 2624475 2625264 ZNF143 GTRD no Epithelial (MCF-7) 108363450
chr19 2624475 2625299 ZNF143 GTRD no Epithelial (MCF-7) 108363451
chr19 2624481 2625262 ZNF274 GTRD no Blood (GM12878) 21837853
chr19 2624481 2625262 ZNF274 GTRD no Blood (GM12878) 108363456
chr19 2624481 2625400 ZNF274 GTRD no Cervix (HeLa-S3) 21837854
chr19 2624481 2625400 ZNF274 GTRD no Cervix (HeLa-S3) 108363457
chr19 2624492 2625245 ZNF274 GTRD no Cervix (HeLa-S3) 21837857
chr19 2624492 2625245 ZNF274 GTRD no Cervix (HeLa-S3) 108363460
chr19 2624512 2625407 TCF7L2 GTRD no Colon (HCT116) 21837864
chr19 2624512 2625407 TCF7L2 GTRD no Colon (HCT116) 108363467
chr19 2624516 2625248 ZNF274 GTRD no Blood (GM12878) 21837865
chr19 2624516 2625248 ZNF274 GTRD no Blood (GM12878) 108363468
chr19 2624525 2625352 ZNF274 GTRD no Blood (GM12878) 21837871
chr19 2624525 2625352 ZNF274 GTRD no Blood (GM12878) 108363475
chr19 2624551 2625747 TCF7L2 GTRD no Colon (HCT116) 21837882
chr19 2624551 2625747 TCF7L2 GTRD no Colon (HCT116) 108363492
chr19 2624551 2625747 TCF7L2 GTRD no Colon (HCT116) 108363493
chr19 2625227 2625242 HNF1A JASPAR yes 112085149
chr19 2625228 2625241 HNF1B JASPAR yes 112085150
Genes associated with rs7245853[chr19:2625239], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More