EnhancerDB
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  3. rs72653942[chr1:19771821]
Enhancers that have rs72653942[chr1:19771821]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs72653942[chr1:19771821]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19771802 19771822 RREB1 JASPAR yes 27191214
chr1 19771805 19771825 RREB1 JASPAR yes 27191215
chr1 19771807 19771827 RREB1 JASPAR yes 27191216
chr1 19771811 19771832 IRF1 JASPAR yes 27191217
chr1 19771814 19771828 IRF7 JASPAR yes 27191218
chr1 19771815 19771830 PRDM1 JASPAR yes 27191219
chr1 19771815 19771830 STAT2 JASPAR yes 27191220
chr1 19771816 19771828 IRF1 JASPAR yes 27191221
Genes associated with rs72653942[chr1:19771821], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More