EnhancerDB
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  3. rs75002296[chr19:10988071]
Enhancers that have rs75002296[chr19:10988071]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10983285 11012541 enh5003
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 10988040 10988081 vista28610
VISTA
Transcript factors that have rs75002296[chr19:10988071]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 21849100
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 108384170
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 108384171
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 21849102
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 108384173
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 108384174
chr19 10987424 10988237 ZNF143 GTRD no Epithelial (MCF-7) 21849122
chr19 10987424 10988237 ZNF143 GTRD no Epithelial (MCF-7) 108384201
chr19 10987424 10988237 ZNF143 GTRD no Epithelial (MCF-7) 108384202
chr19 10987471 10988108 TCF7L2 GTRD no Colon (HCT116) 21849127
chr19 10987471 10988108 TCF7L2 GTRD no Colon (HCT116) 108384207
chr19 10987471 10988108 TCF7L2 GTRD no Colon (HCT116) 108384208
chr19 10987502 10988331 TCF7L2 GTRD no Colon (HCT116) 21849130
chr19 10987502 10988331 TCF7L2 GTRD no Colon (HCT116) 108384211
chr19 10987502 10988331 TCF7L2 GTRD no Colon (HCT116) 108384212
chr19 10987716 10988099 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849136
chr19 10987716 10988099 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384218
chr19 10987716 10988099 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384219
chr19 10988063 10988081 ESR2 JASPAR yes 70803428
chr19 10988063 10988081 ESR2 JASPAR yes 112441870
Genes associated with rs75002296[chr19:10988071], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More