EnhancerDB
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  3. rs7546220[chr1:234634715]
Enhancers that have rs7546220[chr1:234634715]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234620765 234647895 enh990
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs7546220[chr1:234634715]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234634120 234634716 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21393415
chr1 234634360 234634990 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21393417
chr1 234634651 234635281 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21393418
chr1 234634661 234635277 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21393419
chr1 234634694 234635094 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21393420
chr1 234634696 234635172 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21393421
chr1 234634706 234634718 GLI2 JASPAR yes 36279360
chr1 234634707 234634722 ESR2 JASPAR yes 36279361
chr1 234634707 234634727 ESR1 JASPAR yes 36279362
chr1 234634715 234634724 THAP1 JASPAR yes 36279363
Genes associated with rs7546220[chr1:234634715], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More