EnhancerDB
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  3. rs7546588[chr1:117420489]
Enhancers that have rs7546588[chr1:117420489]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
Transcript factors that have rs7546588[chr1:117420489]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117420469 117421019 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334030
chr1 117420477 117420492 MEF2A JASPAR yes 31847809
chr1 117420479 117420491 MEF2A JASPAR yes 31847810
chr1 117420480 117420490 MEF2A JASPAR yes 31847811
chr1 117420487 117420493 TBP TRANSFAC yes 31847813
chr1 117420488 117420500 FOXC2 JASPAR yes 31847814
Genes associated with rs7546588[chr1:117420489], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More