EnhancerDB
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  3. rs7549338[chr1:154404380]
Enhancers that have rs7549338[chr1:154404380]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154376585 154406743 enh12276
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 154404273 154404562 vista3377
VISTA
Transcript factors that have rs7549338[chr1:154404380]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154404035 154404439 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21340447
chr1 154404035 154404439 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107832617
chr1 154404046 154404430 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21340449
chr1 154404046 154404430 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107832619
chr1 154404048 154404448 FOS UCSC Txn Factor no Conserved 107832620
chr1 154404055 154404451 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832621
chr1 154404061 154404517 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832622
chr1 154404081 154404411 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832623
chr1 154404097 154404417 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21340451
chr1 154404097 154404417 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107832626
chr1 154404124 154411940 ZNF274 GTRD no Blood (GM12878) 21340452
chr1 154404124 154411940 ZNF274 GTRD no Blood (GM12878) 107832628
chr1 154404124 154411940 ZNF274 GTRD no Blood (GM12878) 107832629
chr1 154404124 154411940 ZNF274 GTRD no Blood (GM12878) 107832630
chr1 154404129 154404493 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832631
chr1 154404154 154407182 TEF1 GTRD no Bone (Osteoblast) 21340453
chr1 154404154 154407182 TEF1 GTRD no Bone (Osteoblast) 107832634
chr1 154404154 154407182 TEF1 GTRD no Bone (Osteoblast) 107832635
chr1 154404154 154407182 TEF1 GTRD no Bone (Osteoblast) 107832636
chr1 154404177 154404457 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832637
chr1 154404189 154404419 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107832638
chr1 154404287 154407186 ZBTB33 GTRD no Lung (A549) 21340454
chr1 154404287 154407186 ZBTB33 GTRD no Lung (A549) 107832639
chr1 154404287 154407186 ZBTB33 GTRD no Lung (A549) 107832640
chr1 154404287 154407186 ZBTB33 GTRD no Lung (A549) 107832641
chr1 154404289 154407988 ZNF274 GTRD no Blood (GM12878) 21340455
chr1 154404289 154407988 ZNF274 GTRD no Blood (GM12878) 107832642
chr1 154404289 154407988 ZNF274 GTRD no Blood (GM12878) 107832643
chr1 154404289 154407988 ZNF274 GTRD no Blood (GM12878) 107832644
chr1 154404321 154405453 ZNF274 GTRD no Blood (GM12878) 21340456
chr1 154404321 154405453 ZNF274 GTRD no Blood (GM12878) 107832645
chr1 154404321 154405453 ZNF274 GTRD no Blood (GM12878) 107832646
chr1 154404338 154407001 ZNF143 GTRD no Epithelial (MCF-7) 21340457
chr1 154404338 154407001 ZNF143 GTRD no Epithelial (MCF-7) 107832647
chr1 154404338 154407001 ZNF143 GTRD no Epithelial (MCF-7) 107832648
chr1 154404338 154407001 ZNF143 GTRD no Epithelial (MCF-7) 107832649
chr1 154404343 154407743 ZNF274 GTRD no Cervix (HeLa-S3) 21340458
chr1 154404343 154407743 ZNF274 GTRD no Cervix (HeLa-S3) 107832650
chr1 154404343 154407743 ZNF274 GTRD no Cervix (HeLa-S3) 107832651
chr1 154404343 154407743 ZNF274 GTRD no Cervix (HeLa-S3) 107832652
chr1 154404353 154404799 ZNF274 GTRD no Liver (HepG2) 21340459
chr1 154404353 154404799 ZNF274 GTRD no Liver (HepG2) 107832653
chr1 154404371 154404380 HIC2 JASPAR yes 32292275
chr1 154404371 154404380 HIC2 JASPAR yes 118373001
Genes associated with rs7549338[chr1:154404380], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 154377669 154441926 + IL6R ENSG00000160712.8 154377669 0 Esophagus 0.173465 1300