EnhancerDB
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  3. rs7554580[chr1:171409933]
Enhancers that have rs7554580[chr1:171409933]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs7554580[chr1:171409933]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171409915 171409934 PAX5 JASPAR yes 33081420
chr1 171409925 171409940 JUND JASPAR yes 33081421
chr1 171409926 171409939 JUN JASPAR yes 33081422
chr1 171409927 171409941 ATF7 JASPAR yes 33081423
chr1 171409928 171409940 JDP2 JASPAR yes 33081424
chr1 171409928 171409943 JUND JASPAR yes 33081425
Genes associated with rs7554580[chr1:171409933], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More