EnhancerDB
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  3. rs76064820[chr17:55539396]
Enhancers that have rs76064820[chr17:55539396]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55530146 55569915 enh4488
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs76064820[chr17:55539396]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773526
chr17 55539307 55541179 POLR2A UCSC Txn Factor no Conserved 108274069
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274070
chr17 55539391 55539401 GCM2 JASPAR yes 54957262
chr17 55539391 55539402 GCM1 JASPAR yes 54957263
chr17 55539393 55539402 THAP1 JASPAR yes 54957264
chr17 55539395 55539405 SP1 JASPAR yes 54957265
chr17 55539396 55539400 LFA1 TRANSFAC yes 54957266
Genes associated with rs76064820[chr17:55539396], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More