EnhancerDB
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Enhancers that have rs77428743[chr12:125188483]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125188436 125188747 vista15322
VISTA
Transcript factors that have rs77428743[chr12:125188483]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125188009 125189194 AR GTRD no Prostate (PC-3) 21582083
chr12 125188009 125189194 AR GTRD no Prostate (PC-3) 108069534
chr12 125188089 125188605 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582084
chr12 125188089 125188605 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069535
chr12 125188192 125188722 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582085
chr12 125188192 125188722 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069536
chr12 125188435 125188939 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582086
chr12 125188435 125188939 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069537
chr12 125188436 125188818 TCF7L2 GTRD no Colon (HCT116) 21582087
chr12 125188436 125188818 TCF7L2 GTRD no Colon (HCT116) 108069538
chr12 125188445 125188785 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582088
chr12 125188445 125188785 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069539
chr12 125188448 125188724 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582089
chr12 125188448 125188724 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069540
chr12 125188460 125188777 TCF7L2 GTRD no Colon (HCT116) 21582090
chr12 125188460 125188777 TCF7L2 GTRD no Colon (HCT116) 108069541
chr12 125188472 125188781 SOX2 GTRD no Neural Stem Cells (H9) 21582091
chr12 125188472 125188781 SOX2 GTRD no Neural Stem Cells (H9) 108069542
chr12 125188476 125188496 TBX19 JASPAR yes 82497353
chr12 125188476 125188496 TBX19 JASPAR yes 124411007
chr12 125188478 125188494 T JASPAR yes 82497354
chr12 125188478 125188494 T JASPAR yes 124411008
Genes associated with rs77428743[chr12:125188483], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More