EnhancerDB
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  3. rs77554577[chr16:85254890]
Enhancers that have rs77554577[chr16:85254890]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs77554577[chr16:85254890]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85250697 85255346 ZNF143 GTRD no Epithelial (MCF-7) 21721380
chr16 85250756 85255120 ZNF143 GTRD no Epithelial (MCF-7) 21721384
chr16 85250777 85255302 TCF7L2 GTRD no Colon (HCT116) 21721386
chr16 85250978 85255439 TCF7L2 GTRD no Colon (HCT116) 21721391
chr16 85251134 85255621 TCF7L2 GTRD no Colon (HCT116) 21721398
chr16 85251514 85254895 ZNF143 GTRD no Epithelial (MCF-7) 21721402
chr16 85251959 85255261 TCF7L2 GTRD no Colon (HCT116) 21721407
chr16 85252479 85255217 ZNF143 GTRD no Epithelial (MCF-7) 21721421
chr16 85252716 85254908 TCF7L2 GTRD no Colon (HCT116) 21721428
chr16 85253086 85255035 ZNF143 GTRD no Epithelial (MCF-7) 21721478
chr16 85254571 85255430 TCF7L2 GTRD no Colon (HCT116) 21721527
chr16 85254641 85254902 ZNF274 GTRD no Bone Marrow (K562) 21721528
chr16 85254756 85255750 TCF7L2 GTRD no Colon (HCT116) 21721529
chr16 85254865 85255360 TCF7L2 GTRD no Colon (HCT116) 21721530
chr16 85254873 85254890 RARA JASPAR yes 12034501
chr16 85254873 85254890 RXRA JASPAR yes 12034502
Genes associated with rs77554577[chr16:85254890], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More