EnhancerDB
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  3. rs78078909[chr5:172261538]
Enhancers that have rs78078909[chr5:172261538]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172258805 172341224 enh22817
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78078909[chr5:172261538]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172261533 172261544 E2F4 JASPAR yes 67832304
chr5 172261536 172261542 SP1 TRANSFAC yes 67832305
chr5 172261538 172261543 SP1 TRANSFAC yes 67832306
Genes associated with rs78078909[chr5:172261538], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr5 172261278 172379688 + ERGIC1 ENSG00000113719.11 172261278 0 Lung 0.000584088 5986