EnhancerDB
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  3. rs78088477[chr11:65198709]
Enhancers that have rs78088477[chr11:65198709]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 65180298 65217415 enh1825
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78088477[chr11:65198709]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 65183437 65204678 POLR2A UCSC Txn Factor no Conserved 107977988
chr11 65183437 65204678 POLR2A UCSC Txn Factor no Conserved 107977989
chr11 65183437 65204678 POLR2A UCSC Txn Factor no Conserved 107977990
chr11 65190110 65199314 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21492171
chr11 65198244 65198808 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21492687
chr11 65198325 65198754 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21492688
chr11 65198649 65199135 ZNF274 GTRD no Blood (GM12878) 21492689
chr11 65198664 65199130 ZNF274 GTRD no Blood (GM12878) 21492690
chr11 65198690 65199374 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21492691
chr11 65198704 65198716 FOXI1 JASPAR yes 39315562
Genes associated with rs78088477[chr11:65198709], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More